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Faculty

  • Kim, Hyun-Taek, Ph.D.

    Associate Professor

    Lung Development & Homeostasis, Lung Diseases, Tissue Regeneration, Genome Editing

    Room 204, SIMS

    +82-41-413-5018

    hyun-taek.kim@sch.ac.kr

Lab of Developmental Genetics

The respiratory system, which consists of the lungs, trachea and associated vasculature, is essential for terrestrial life. In particular, lungs are complex organs that consists of at least 40 different cell types, including epithelial cells, mesenchymal cells, vascular endothelial cells, and immune cells. These cellular components are constantly communicating with each other to exchange gas efficiently while preventing blood and fluid loss and dangerous infection from pathogens. We are investigating respiratory development and morphogenesis, lung homeostasis and regeneration, and diseases by using imaging, in vitro and ex vivo culture technology, and animal models.

 

1. Lung development and differentiation

The lung development and differentiation process is subdivided into the embryonic stage, pseudoglandular stage, canalicular stage, saccular stage, and alveolar stage. During alveolarization stage, division of the alveolar ducts into alveolar sacs by secondary septation, and expansion of the pulmonary capillary bed via angiogenesis increase the gas exchange surface area of the lung. The objective of our laboratory is to elucidate the molecular mechanisms that direct alveolar development and lung cell differentiation.


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2. Cellular interaction during lung regeneration

Although the lung has a low rate of cellular turnover during homeostasis, it has an ability to regenerate epithelial cells after injury. The lung injury by sulfur dioxide or naphthalene is fully restored to normal epithelium on 2-3 weeks after injury. Our lab is investigating the molecular and cellular interaction during lung regeneration after injury.


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3. Humanized animal models

Humanized disease animal models can be widely used to evaluate the etiology of lung diseases, toxicity and efficacy of therapeutic candidates. In particular, genetically modified models are useful for the study of hereditary lung diseases.

Our laboratory has identified mutant mice exhibiting respiratory phenotypes which are lung collase, inflammation, fibrosis, and asthma during lung development and homeostasis. We have a plan a next-generation sequencing (NGS) to identify the causal mutation for the mutants.


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 4. Lung diseases and therapeutic target molecules

Lung disease is the third-leading cause of death in the world. The disease includes disorders such as COPD, asthma, respiratory distress syndrome, lung cancer and infections such as virus and bacteria.

Our lab is focused on development of precise diagnostic markers or therapeutic target molecules for these diseases.


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Principal Investigator


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김현택 (Hyun-Taek Kim)

 

Biography

B.S. in Biology, Kyungnam University, Korea

M.S. in Biology, Chungnam National University, Korea

Ph.D. in Biology, Chungnam National University, Korea

Postdoctoral Fellow. Hanbat National University, Korea

Postdoctoral Fellow. Chungnam National University, Korea

Postdoctoral Fellow. Max Planck Institute for Heart and Lung Research, Germany

Assistant Professor. Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea

Associate Professor. Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea



Research Scientist


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김수경 (Su-Kyung Kim)

B.S. in Biology, Kongju National University, Korea

M.S. in Biology, Chungnam National University, Korea

Research Scientist. Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea


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한혜정 (Hye-Jeong Han)

B.S. in Biology, Chungnam National University, Korea

M.S. in Biology, Chungnam National University, Korea

Research Scientist. Soonchunhyang Institute of Medi-bio Science(SIMS), Soonchunhyang University, Korea





37. Kim HT* (*corresponding author), Yin W, Nakamichi Y, Panza P, Grohmann B, Buettner C, Guenther S, Clemens R, Kobayashi Y, Guenther A, Stainier DYR*. WNT/RYK signaling restricts goblet cell differentiation during lung development and repair. Proc Natl Acad Sci U S A. 2019.116(51):25697-25706. PMID: 31776260.

  

36. Yin W, Kim HT, Wang S, Gunawan F, Li R, Buettner C, Grohmann B, Sengle G, Sinner D, Offermanns S, Stainier DYR. Fibrillin-2 is a key mediator of smooth muscle extracellular matrix homeostasis during mouse tracheal tubulogenesis. Eur Respir J. 2018. pii: 1800840. PMID: 30578393.

 

35. Kim HT* (*corresponding author), Yin W, Jin YJ, Panza P, Gunawan F, Grohmann B, Buettner C, Sokol AM, Preussner J, Guenther S, Kostin S, Ruppert C, Bhagwat AM, Ma X, Graumann J, Looso M, Guenther A, Offermanns S, Adelstein RS, Stainier DYR*. Myh10 deficiency leads to defective extracellular matrix remodeling and pulmonary disease. Nat. Commun. 2018. 9(1):4600. PMID: 3039913.

  

34. Lee SH, Shin SM, Zong P, Kim HT, Kim DI, Kim JM, Do Heo W, Kim DW, Yeo CY, Kim CH. Liu Q. Reciprocal control of excitatory synapse numbers by Wnt and Novel Wnt inhibitor secreted on exosomes. Nat. Commun. 2018. 9(1):3434. PMID: 30143647.

  

33. Yin W, Kim HT, Wang S, Gunawan F, Wang L, Kishimoto K, Zhong H, Roman D, Preussner J, Guenther S, Graef V, Buettner C, Grohmann B, Looso M, Morimoto M, Mardon G, Offermanns S, Stainier DYR. The potassium channel KCNJ13 is essential for smooth muscle cytoskeletal organization during mouse tracheal tubulogenesis. Nat Commun. 2018. 9(1):2815. PMID: 30022023.

  

32. Liu ZZ, Wang ZL, Choi TI, Huang WT, Wang HT, Han YY, Zhu LY,Kim HT, Choi JH, Lee JS, Kim HG, Zhao J, Chen Y, Lu Z, Tian XL, Pan BX, Li BM, Kim CH, Xu H. Chd7 Is Critical for Early T-Cell Development and Thymus Organogenesis in Zebrafish. Am J Pathol.2018. 188(4):1043-1058. PMID: 29353058.

  

31. Choi JH, Jeong YM, Kim S, Lee B, Ariyasiri K, Kim HT, Jung SH, Hwang KS, Choi TI, Park CO, Huh WK, Carl M, Rosenfeld JA, Raskin S, Ma A, Gecz J, Kim HG, Kim JS, Shin HC, Park DS, Gerlai R, Jamieson BB, Kim JS, Iremonger KJ, Lee SH, Shin HS, Kim CH. Targeted knockout of a novel chemokine-like gene increases anxiety and fear responses. Proc Natl Acad Sci U S A.2018. 115(5):E1041-E1050. PMID:29339520.

  

30. Kim YJ, Osborn DP, Lee JY, Araki M, Araki K, Mohun T, Kansakoski J, Brandstack N, Kim HT, Miralles F, Kim CH, Brown NA, Kim HG, Martinez-Barbera JP, Ataliotis P, Raivio T, Layman LC, Kim SH. WDR11-mediated Hedgehog signalling defects underlie a new ciliopathy related to Kallmann syndrome. EMBO Rep. 2018 19(2):269-289. PMID:29263200.

  

29. Dogra D, Ahuja S, Kim HT, Rasouli SJ, Stainier DYR, Reischauer S. Opposing effects of TGF-b ligands on cardiomyocyte proliferation during cardiac development and repair. Nat. Commun. 2017. 8(1):1902. PMID:29196619.

  

28. Kim HT*, Lee MS* (*equally contributed first author), Jeong YM, Ro H, Kim DI, Shin YH, Kim JE, Hwang KS, Choi JH, Bahn M, Lee JJ, Lee SH, Bae YK, Lee JS, Choi JK, Kim NS, Yeo CY, Kim CH. Ottogi Inhibits Wnt/β-catenin Signaling by Regulating Cell Membrane Trafficking of Frizzled8. Sci. Rep. 2017. 7(1):13278. PMID: 29038508.

  

27. Lee JH, Cho HS, Lee JJ, Jun SY, Ahn JH, Min JS, Yoon JY, Choi MH, Jeon SJ, Lim JH, Jung CR, Kim DS, Kim HT, Factor VM, Lee YH, Thorgeirsson SS, Kim CH, Kim NS. Plasma glutamate carboxypeptidase is a negative regulator in live cancer metastasis. Oncotarget. 2016. 7(48):79774-79786. PMID: 27806330.

  

26. May M, Hwang KS, Miles J, Williams C, Niranjan T, Kahler SG, Chiurazzi P, Steindl K, Van der Spek PJ, Swagemakers S, Mueller J, Stefl S, Alexov E, Ryu JI, Choi JH, Kim HT, Tarpey P, Neri G, Holloway L, Skinner C, Stevenson RE, Dorsky RI, Wang T, Schwartz CE, Kim CH. ZC4H2, an XLID Gene, is Required for the Generation of a Specific Subset of CNS Interneurons. Hum. Mol. Genet. 2015. 24(17):4848-61. PMID: 26056227.

  

25. Lee MS, Hwang KS, Oh HW, Ji-Ae K, Kim HT, Cho HS, Lee JJ, Yeong Ko J, Choi JH, Jeong YM, You KH, Kim J, Park DS, Nam KH, Aizawa S, Kiyonari H, Shioi G, Park JH, Zhou W, Kim NS, Kim CH. IFT46 plays an essential role in cilia development. Dev. Biol. 2015. 400(2):248-57. PMID: 25722189.

 

24. Jeong YM, Jin TE, Choi JH, Lee MS, Kim HT, Hwang KS, Park DS, Oh HW, Choi JK, Korzh V, Schachner M, You KH, Kim CH. Induction of clusterin expression by neuronal cell death in zebrafish. J Genet. Genomics. 2014. 41:583-9. PMID: 25434681.

 

23. So JH, Kim JD, Yoo KW, Kim HT, Jung SH, Choi JH, Lee MS, Jin SW, Kim CH. FIH-1, a Novel Interactor of Mindbomb, Functions as an Essential Anti-Angiogenic Factor during Zebrafish Vascular Development. PLoS One. 2014. 9(10):e109517. PMID: 25347788.

  

22. Lee SH, So JH, Kim HT, Choi JH, Lee MS, Choi SY, Kim CH, Kim MJ. Angiopoietin-like 3 regulates hepatocyte proliferation and lipid metabolism in zebrafish. Biochem. Biophys. Res. Commun. 2014. 446(4):1237-42. PMID: 24685482.

  

21. Sung YH*, Kim JM*, Kim HT* (*equal contribution), Lee J, Jeon J, Jin Y, Choi JH, Ban YH, Ha SJ, Kim CH, Lee HW, Kim JS. Highly efficient gene knockout in mice and zebrafish with RNA-guided endonucleases. Genome Res. 2014. 24(1):125-31. PMID: 24253447.

  

20. Kim YI, Lee S, Jung SH, Kim HT, Choi JH, Lee MS, You KH, Yeo SY, Yoo KW, Kwak S, Lee JN, Park R, Choe SK, Kim CH. Establishment of a bone-specific col10a1:GFP transgenic zebrafish. Mol. Cells. 2013. 36(2):145-50. PMID: 23852131.

  

19. Moon HY, Kim OH, Kim HT, Choi JH, Yeo SY, Kim NS, Park DS, Oh HW, You KH, De Zoysa M, Kim CH.. Establishment of a transgenic zebrafish EF1:Kaede for monitoring cell proliferation during regeneration. Fish Shellfish Immunol. 2013. 34(5):1390-4. PMID: 23470815.

 

18. Kim GY, Kim HY, Kim HT, Moon JM, Kim CH, Kang S, Rhim H. HtrA1 is a novel antagonist controlling FGF signaling via cleavage of FGF8. Mol. Cell. Biol. 2012. 32(21):4482. PMID: 22949504.

  

17. Song IS, Jun SY, Na HJ, Kim HT, Jung SY, Ha GH, Park YH, Long LZ, Yu DY, Kim JM, Kim JH, Ko JH, Kim CH, Kim NS. Inhibition of MKK7-JNK by the TOR Signaling Pathway Regulator-Like Protein Contributes to Resistance of HCC cells to TRAIL-Induced Apoptosis. Gasteroenterology. 2012. 143(5):1341-51. PMID: 22841785.

  

16. Kim HG*, Kim HT* (*equal contribution) Leach NT*, Lan F*, Ullmann R, Silahtaroglu A, Kurth I, Nowka A, Seong IS, Shen Y, Talkowski ME, Ruderfer D, Lee JH, Glotzbach C, Ha K, Kjaergaard S, Levin AV, Romeike BF, Kleefstra T, Bartsch O, Elsea SH, Jabs EW, MacDonald ME, Harris DJ, Quade BJ, Ropers HH, Shaffer LG, Kutsche K, Layman LC, Tommerup N, Kalscheuer VM, Shi Y, Morton CC, Kim CH, Gusella JF. Translocations Disrupting PHF21A in the Potocki-Shaffer-Syndrome Region Are Associated with Intellectual Disability and Craniofacial Anomalies. Am. J. Hum. Genet. 2012. 91(1):56-72. PMID: 22770980.

  

15. Kim HT, So JH, Jung SH, Ahn DG, Koh W, Kim NS, Kim SH, Lee S and Kim CH. Cug2 is essential for normal mitotic control and CNS development in zebrafish. BMC Dev. Biol. 2011. 11:49. PMID: 21838932.

  

14. Kim HT, Lee MS, Choi JH, Jung JY, Ahn DG, Yeo SY, Choi DK, Kim CH. The microcephaly gene aspm is involved in brain development in zebrafish. Biochem. Biophys. Res. Commun. 2011. 409:640-644. PMID: 21620798.

  

13. Dam TM, Kim HT* (*equal contribution), Moon HY, Hwang KS, Jeong YM, You KH, Lee JS, Kim CH. Neuron-specific expression of Scratch genes during early zebrafish development. Mol. Cells. 2011. 31(5):471-5. PMID: 21448584.

  

12. So JH, Hong SK, Kim HT, Jung SH, Lee MS, Choi JH, Bae YK, Kudoh T, Kim JH, Kim CH. Gicerin/Cd146 is involved in zebrafish cardiovascular development and tumor angiogenesis. Genes Cells. 2010. 15(11):1099-110. PMID: 20977546.

  

11. Kim HG, Ahn JW, Kurth I, Ullmann R, Kim HT, Kulharya A, Ha KS, Itokawa Y, Meliciani I, Wenzel W, Lee D, Rosenberger G, Ozata M, Bick DP, Sherins RJ, Nagase T, Tekin M, Kim SH, Kim CH, Ropers HH, Gusella JF, Kalscheuer V, Choi CY, Layman LC. WDR11, a WD protein that interacts with tranion factor EMX1, is mutated in idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. Am. J. Hum. Genet. 2010. 87(4):465-79. PMID: 20887964.

 

10. Kang N, Ro H, Park Y, Kim HT, Huh TL, Rhee M. Seson, a novel zinc finger protein, controls cilia integrity for the LR patterning during zebrafish embryogenesis. Biochem. Biophys. Res. Commun. 2010. 401(2):169-74. PMID: 20816938

  

9. Lee S, Koh W, Kim HT, Kim CH, Lee S. Cancer-upregulated gene 2 (CUG2) overexpression induces apoptosis in SKOV-3 cells. Cell Biochem. Funct. 2010. 28(6):461-8. PMID: 20648695.

  

8. Jung SH, Kim S, Chung AY, Kim HT, So JH, Ryu J, Park HC, Kim CH. Visualization of myelination in GFP-transgenic zebrafish. Dev. Dyn. 2010. 239(2):592-7. PMID: 19918882.

  

7. Kim J, Kim Y, Kim HT, Kim DW, Ha Y, Kim J, Kim CH, Lee I, Song K. TC1(C8orf4) is a novel endothelial inflammatory regulator enhancing NF-kappaB activity. J. Immunol. 2009. 183(6):3996-4002. PMID: 19684084.

  

6. Song IS, Oh NS, Kim HT, Ha GH, Jeong SY, Kim JM, Kim DI, Yoo HS, Kim CH, Kim NS. Human ZNF312b promotes the progression of gastric cancer by tranional activation of the K-ras gene. Cancer Res. 2009. 69(7):3131-9. PMID: 19318583.

  

5. Kim HT, Kim EH* (*equal contribution), Yoo KW, Lee MS, Choi JH, Park HC, Yeo SY, Lee DS, Kim CH. Isolation and expression analysis of Alzheimer's disease-related gene xb51 in zebrafish. Dev. Dyn. 2008. 237(12):3921-6. PMID: 19035353.

 

4. Sohn H, Kim YS, Kim HT, Kim CH, Cho EW, Kang HY, Kim NS, Kim CH, Ryu SE, Lee JH, Ko JH. Ganglioside GM3 is involved in neuronal cell death. FASEB J. 2006. 20(8):1248-50. PMID: 16636105.

  

3. Kim EA, Noh YT, Ryu MJ, Kim HT, Lee SE, Kim CH, Lee C, Kim YH, Choi CY. Phosphorylation and transactivation of Pax6 by homeodomain-interacting protein kinase 2. J. Biol. Chem. 2006. 281(11):7489-97. PMID: 16407227.

  

2. Song R, Koo BK, Yoon KJ, Yoon MJ, Yoo KW, Kim HT, Oh HJ, Kim YY, Han JK, Kim CH, Kong YY. Neuralized-2 regulates a Notch ligand in cooperation with Mind bomb-1. J. Biol. Chem. 2006. 281(47):36391-400. PMID: 17003037.

  

1. Son OL, Kim HT, Ji MH, Yoo KW, Rhee M, Kim CH. Cloning and expression analysis of a Parkinson's disease gene, uch-L1, and its promoter in zebrafish. Biochem. Biophys. Res. Commun. 2003. 312(3):601-7. PMID: 14680807.